2JPD Dna Binding Protein date May 06, 2007
title Solution Structure Of The Ercc1 Central Domain
authors K.Tripsianes, G.Folkers, C.Zheng, D.Das, J.S.Grinstead, R.Kaptein, R.Boelens
compound source
Molecule: Dna Excision Repair Protein Ercc-1
Chain: A
Fragment: Residues 96-219
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ercc1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet28b
methodSolution NMR
note 2JPD is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAnalysis of the XPA and ssDNA-binding surfaces on the central domain of human ERCC1 reveals evidence for subfunctionalization., Tripsianes K, Folkers GE, Zheng C, Das D, Grinstead JS, Kaptein R, Boelens R, Nucleic Acids Res. 2007 Aug 24;. PMID:17720715
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (669 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2JPD
  • Original NMR restraints for 2JPD from PDB
  • Retrieve 2JPD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JPD from S2C, [Save to disk]
  • View 2JPD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JPD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JPD, from MSDmotif at EBI
  • Fold representative 2jpd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jpd] [2jpd_A]
  • SWISS-PROT database: [P07992]
  • Domain organization of [ERCC1_HUMAN] by SWISSPFAM
  • Other resources with information on 2JPD
  • Community annotation for 2JPD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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