2JRI Hydrolase Signaling Protein date Jun 27, 2007
title Solution Structure Of The Josephin Domain Of Ataxin-3 In Complex With Ubiquitin Molecule.
authors G.Nicastro, L.Masino, V.Esposito, R.Menon, A.Pastore
compound source
Molecule: Ataxin-3
Chain: A
Fragment: N-Terminal Domain Of Ataxin-3 Sequence Database Residues 1-182;
Synonym: Machado-Joseph Disease Protein 1, Spinocerebellar Ataxia Type 3 Protein;
Ec: 3.4.22.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Atxn3, Atx3, Mjd, Mjd1, Sca3
Expression_system: Escherichia Coli
Expression_system_strain: Bl21
Expression_system_variant: De3

Molecule: Ubc Protein
Chain: B, C
Fragment: Sequence Database Residues 318-469
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Ubc
Expression_system: Escherichia Coli
Expression_system_strain: Bl21
Expression_system_variant: De3
Expression_system_vector_type: Vector
Expression_system_vector: Pet21b
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.4.22 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1883 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2JRI
  • Retrieve 2JRI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JRI from S2C, [Save to disk]
  • View 2JRI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JRI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JRI, from MSDmotif at EBI
  • Fold representative 2jri from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jri] [2jri_B] [2jri_A] [2jri_C]
  • SWISS-PROT database: [P54252] [P62988]
  • Domain organization of [ATX3_HUMAN] [UBIQ_HUMAN] by SWISSPFAM
  • Domains found in 2JRI: [Josephin] [UBQ ] by SMART
  • Other resources with information on 2JRI
  • Community annotation for 2JRI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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