2LAV Transferase date Mar 21, 2011
title Nmr Solution Structure Of Human Vaccinia-Related Kinase 1
authors J.Shin, H.S.Yoon
compound source
Molecule: Vaccinia-Related Kinase 1
Chain: A
Synonym: Serinethreonine-Protein Kinase Vrk1
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vrk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet29b
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR solution structure of human vaccinia-related kinase 1 (VRK1) reveals the C-terminal tail essential for its structural stability and autocatalytic activity., Shin J, Chakraborty G, Bharatham N, Kang C, Tochio N, Koshiba S, Kigawa T, Kim W, Kim KT, Yoon HS, J Biol Chem. 2011 May 12. PMID:21543316
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2283 Kb) [Save to disk]
  • Biological Unit Coordinates (2lav.pdb1.gz) 116 Kb
  • CSU: Contacts of Structural Units for 2LAV
  • Original NMR restraints for 2LAV from PDB
  • Retrieve 2LAV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LAV from S2C, [Save to disk]
  • View 2LAV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LAV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LAV, from MSDmotif at EBI
  • Fold representative 2lav from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lav] [2lav_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LAV: [STYKc ] by SMART
  • Other resources with information on 2LAV
  • Community annotation for 2LAV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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