2LDM Transcription Protein Binding date May 30, 2011
title Solution Structure Of Human Phf20 Tudor2 Domain Bound To A P Containing A Dimethyllysine Analog P53k370me2
authors G.Cui, M.Botuyan, G.Mer
compound source
Molecule: Uncharacterized Protein
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Ptev
methodSolution NMR
ligand M2L enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePHF20 is an effector protein of p53 double lysine methylation that stabilizes and activates p53., Cui G, Park S, Badeaux AI, Kim D, Lee J, Thompson JR, Yan F, Kaneko S, Yuan Z, Botuyan MV, Bedford MT, Cheng JQ, Mer G, Nat Struct Mol Biol. 2012 Aug 5. doi: 10.1038/nsmb.2353. PMID:22864287
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (404 Kb) [Save to disk]
  • Biological Unit Coordinates (2ldm.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 2LDM
  • CSU: Contacts of Structural Units for 2LDM
  • Original NMR restraints for 2LDM from PDB
  • Retrieve 2LDM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LDM from S2C, [Save to disk]
    • View 2LDM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2LDM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LDM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ldm] [2ldm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LDM: [TUDOR ] by SMART
    • Other resources with information on 2LDM
  • Community annotation for 2LDM at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science