2LMP Protein Fibril date Dec 08, 2011
title Structural Model For A 40-Residue Beta-Amyloid Fibril With T Symmetry, Positive Stagger
authors R.Tycko, A.Paravastu
compound source
Molecule: Beta-Amyloid Protein 40
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Synonym: Beta-App40
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolid-State NMR
note 2LMP (Molecule of the Month:pdb189)
F, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G

Primary referenceMolecular structural basis for polymorphism in Alzheimer's beta-amyloid fibrils., Paravastu AK, Leapman RD, Yau WM, Tycko R, Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18349-54. Epub 2008 Nov 17. PMID:19015532
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1455 Kb) [Save to disk]
  • Biological Unit Coordinates (2lmp.pdb1.gz) 146 Kb
  • CSU: Contacts of Structural Units for 2LMP
  • Original NMR restraints for 2LMP from PDB
  • Retrieve 2LMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LMP from S2C, [Save to disk]
  • View 2LMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LMP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LMP, from MSDmotif at EBI
  • Fold representative 2lmp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lmp_N] [2lmp_D] [2lmp_L] [2lmp_C] [2lmp_F] [2lmp_P] [2lmp_K] [2lmp] [2lmp_G] [2lmp_A] [2lmp_O] [2lmp_E] [2lmp_I] [2lmp_B] [2lmp_R] [2lmp_Q] [2lmp_M] [2lmp_H] [2lmp_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2LMP
  • Community annotation for 2LMP at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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