2NV5	Hydrolase	date	Nov 10, 2006
title	Crystal Structure Of A C-Terminal Phosphatase Domain Of Ratt Norvegicus Ortholog Of Human Protein Tyrosine Phosphatase, Type, D (Ptprd)
authors	J.B.Bonanno, J.Gilmore, K.T.Bain, M.Iizuka, W.Xu, S.Wasserman, D.S J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
compound		source
Molecule: Ptprd, Phosphatase Chain: A, B, C Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Ptprd Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Modified Pet26
symmetry	Space Group: P 61	R_factor 0.197 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 140.789 140.789 112.431 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Structural genomics of protein phosphatases., Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, Ramagopal UA, Faber-Barata J, Chance MR, Sali A, Fiser A, Zhang ZY, Lawrence DS, Burley SK, J Struct Funct Genomics. 2007 Sep;8(2-3):121-40. Epub 2007 Dec 5. PMID:18058037

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk] Biological Unit Coordinates (2nv5.pdb1.gz) 51 Kb Biological Unit Coordinates (2nv5.pdb2.gz) 52 Kb Biological Unit Coordinates (2nv5.pdb3.gz) 51 Kb CSU: Contacts of Structural Units for 2NV5 Likely Quarternary Molecular Structure file(s) for 2NV5 Structure Factors (659 Kb) Retrieve 2NV5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2NV5 from S2C, [Save to disk] Re-refined 2nv5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2NV5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2NV5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2NV5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2nv5_B] [2nv5] [2nv5_A] [2nv5_C] SWISS-PROT database: [Q64605] [Q8R169] Domain organization of [PTPRS_RAT] [Q8R169_MOUSE] by SWISSPFAM Domain found in 2NV5: [PTPc ] by SMART

Other resources with information on 2NV5

Community annotation for 2NV5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---