2ODE Signaling Protein date Dec 22, 2006
title Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 Activated Gi Alpha 3
authors C.Gileadi, M.Soundararajan, A.P.Turnbull, J.M.Elkins, E.Papagrig A.C.W.Pike, G.Bunkoczi, F.Gorrec, C.Umeano, F.Von Delft, J.Weige A.Edwards, C.H.Arrowsmith, M.Sundstrom, D.A.Doyle, Structural G Consortium (Sgc)
compound source
Molecule: Guanine Nucleotide-Binding Protein G(K) Subunit A
Chain: A, C
Synonym: Gi, Alpha-3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gnai3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4

Molecule: Regulator Of G-Protein Signaling 8
Chain: B, D
Fragment: Residues 42-180
Synonym: Rgs8
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rgs8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 2
R_factor 0.180 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.837 130.216 68.519 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ALF, GDP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceStructural diversity in the RGS domain and its interaction with heterotrimeric G protein alpha-subunits., Soundararajan M, Willard FS, Kimple AJ, Turnbull AP, Ball LJ, Schoch GA, Gileadi C, Fedorov OY, Dowler EF, Higman VA, Hutsell SQ, Sundstrom M, Doyle DA, Siderovski DP, Proc Natl Acad Sci U S A. 2008 Apr 29;105(17):6457-62. Epub 2008 Apr 23. PMID:18434541
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (2ode.pdb1.gz) 81 Kb
  • Biological Unit Coordinates (2ode.pdb2.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 2ODE
  • CSU: Contacts of Structural Units for 2ODE
  • Likely Quarternary Molecular Structure file(s) for 2ODE
  • Structure Factors (1183 Kb)
  • Retrieve 2ODE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ODE from S2C, [Save to disk]
  • Re-refined 2ode structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ODE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ODE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ODE, from MSDmotif at EBI
  • Fold representative 2ode from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ode]
  • SWISS-PROT database: [P08754] [P57771]
  • Domain organization of [GNAI3_HUMAN] [RGS8_HUMAN] by SWISSPFAM
  • Domains found in 2ODE: [G_alpha] [RGS ] by SMART
  • Alignments of the sequence of 2ODE with the sequences similar proteins can be viewed for 2ODE's classification [GNAI3_HUMAN] [RGS8_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [GNAI3_HUMAN] [RGS8_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2ODE
  • Community annotation for 2ODE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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