2ODJ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand C8E, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • channel activity
  • porin activity


    • Primary referenceStructural insight into OprD substrate specificity., Biswas S, Mohammad MM, Patel DR, Movileanu L, van den Berg B, Nat Struct Mol Biol. 2007 Nov;14(11):1108-9. Epub 2007 Oct 21. PMID:17952093
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (2odj.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (2odj.pdb2.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 2ODJ
  • CSU: Contacts of Structural Units for 2ODJ
  • Likely Quarternary Molecular Structure file(s) for 2ODJ
  • Structure Factors (183 Kb)
  • Retrieve 2ODJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ODJ from S2C, [Save to disk]
  • Re-refined 2odj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2ODJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2odj] [2odj_A] [2odj_B]
  • SWISS-PROT database: [P32722]
  • Belongs to the outer membrane porin (opr) family according to TCDB.

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