2OOI Structural Genomics, Unknown Function date Jan 25, 2007
title The Crystal Structure Of Gene Product Sa0254 From Staphyloco Aureus Subsp. Aureus N315
authors R.Zhang, E.Duggan, M.Gu, A.Joachimiak, Midwest Center For Struct Genomics (Mcsg)
compound source
Molecule: Sa0254 Protein
Chain: A, B
Fragment: Residues 73-234
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus Subsp. Aureus
Organism_taxid: 158879
Strain: N315
Gene: Sa0254
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdm68
symmetry Space Group: P 63
R_factor 0.224 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.104 116.104 86.185 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand ZN enzyme
note 2OOI is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (2ooi.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 2OOI
  • CSU: Contacts of Structural Units for 2OOI
  • Likely Quarternary Molecular Structure file(s) for 2OOI
  • Structure Factors (156 Kb)
  • Retrieve 2OOI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OOI from S2C, [Save to disk]
  • Re-refined 2ooi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OOI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OOI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OOI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ooi] [2ooi_A] [2ooi_B]
  • SWISS-PROT database: [Q7A7U1]
  • Domain organization of [Q7A7U1_STAAN] by SWISSPFAM
  • Domain found in 2OOI: [UTRA ] by SMART
    • Other resources with information on 2OOI
  • Community annotation for 2OOI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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