2OX8 Sugar Binding Protein date Feb 20, 2007
title Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain.
authors W.I.Weis, H.Feinberg, K.Drickamer, M.E.Taylor
compound source
Molecule: Scavenger Receptor With C-Type Lectin Type I
Chain: A, B, C, D
Fragment: Crd Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Srcl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32
R_factor 0.233 R_Free 0.308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.422 80.422 67.159 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand CA, CL, ZN enzyme
note 2OX8 is a representative structure
Primary referenceScavenger receptor C-type lectin binds to the leukocyte cell surface glycan Lewis(x) by a novel mechanism., Feinberg H, Taylor ME, Weis WI, J Biol Chem. 2007 Jun 8;282(23):17250-8. Epub 2007 Apr 9. PMID:17420244
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (2ox8.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (2ox8.pdb2.gz) 26 Kb
  • Biological Unit Coordinates (2ox8.pdb3.gz) 25 Kb
  • Biological Unit Coordinates (2ox8.pdb4.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 2OX8
  • CSU: Contacts of Structural Units for 2OX8
  • Likely Quarternary Molecular Structure file(s) for 2OX8
  • Structure Factors (144 Kb)
  • Retrieve 2OX8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OX8 from S2C, [Save to disk]
  • Re-refined 2ox8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OX8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OX8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OX8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ox8_A] [2ox8] [2ox8_C] [2ox8_B] [2ox8_D]
  • SWISS-PROT database: [Q5KU26]
  • Domain organization of [COL12_HUMAN] by SWISSPFAM
  • Domain found in 2OX8: [CLECT ] by SMART
  • Other resources with information on 2OX8
  • Community annotation for 2OX8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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