2P6V	Transcription	date	Mar 19, 2007
title	Structure Of Tafh Domain Of The Human Taf4 Subunit Of Tfiid
authors	X.Wang, D.M.Truckses, S.Takada, T.Matsumura, N.Tanese, R.H.Jacobson
compound		source
Molecule: Transcription Initiation Factor Tfiid Subunit 4 Chain: A Fragment: Tafh Domain Synonym: Tbp-Associated Factor 4, Transcription Initiation Factor Tfiid 135 Kda Subunit, Tafii, 135, Tafii-135, Tafii135, Tafii-130, Tafii130; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Taf4, Taf2c, Taf2c1, Taf4a, Tafii130, Tafii135 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pdest15
symmetry	Space Group: P 63 2 2	R_factor 0.214 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.852 74.852 131.785 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	MLY, SO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Conserved region I of human coactivator TAF4 binds to a short hydrophobic motif present in transcriptional regulators., Wang X, Truckses DM, Takada S, Matsumura T, Tanese N, Jacobson RH, Proc Natl Acad Sci U S A. 2007 May 8;104(19):7839-44. Epub 2007 May 1. PMID:17483474

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk] Biological Unit Coordinates (2p6v.pdb1.gz) 101 Kb LPC: Ligand-Protein Contacts for 2P6V CSU: Contacts of Structural Units for 2P6V Likely Quarternary Molecular Structure file(s) for 2P6V Structure Factors (215 Kb) Retrieve 2P6V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2P6V from S2C, [Save to disk] Re-refined 2p6v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2P6V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2P6V

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2P6V, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2p6v_A] [2p6v] SWISS-PROT database: [O00268] Domain organization of [TAF4_HUMAN] by SWISSPFAM Domain found in 2P6V: [TAFH ] by SMART

Other resources with information on 2P6V

Community annotation for 2P6V at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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