2PGT Transferase date Feb 17, 1997
title Crystal Structure Of Human Glutathione S-Transferase P1-1[V1 Complexed With (9r,10r)-9-(S-Glutathionyl)-10-Hydroxy-9,10- Dihydrophenanthrene
authors X.Ji
compound source
Molecule: Glutathione S-Transferase
Chain: A, B
Synonym: Gst, Hgstp1-1[V104]
Engineered: Yes
Mutation: Yes
Other_details: Hgstp1-1[V104] And Hgstp1-1[I104] Are Natura Occurring Variants Of Hgstp1-1 Obtained By Site-Directed Mu
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: 293
Organ: Placenta
Cellular_location: Cytoplasm
Gene: Gtp_human
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_plasmid: Bl21
symmetry Space Group: C 1 2 1
R_factor 0.183 R_Free NULL
length a length b length c angle alpha angle beta angle gamma
80.180 90.540 69.370 90.00 98.45 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand EPE, GPR, SO4 enzyme Transferase E.C. BRENDA
related structures by homologous chain: 13GS, 18GS
Gene GTP (H. sapiens)
A, B
  • glutathione peroxidase activ...
  • protein binding

  • Primary referenceStructure and function of the xenobiotic substrate-binding site and location of a potential non-substrate-binding site in a class pi glutathione S-transferase., Ji X, Tordova M, O'Donnell R, Parsons JF, Hayden JB, Gilliland GL, Zimniak P, Biochemistry 1997 Aug 12;36(32):9690-702. PMID:9245401
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (2pgt.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 2PGT
  • CSU: Contacts of Structural Units for 2PGT
  • Likely Quarternary Molecular Structure file(s) for 2PGT
  • Structure Factors (245 Kb)
  • Retrieve 2PGT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PGT from S2C, [Save to disk]
  • Re-refined 2pgt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PGT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PGT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PGT, from MSDmotif at EBI
  • Genome occurence of 2PGT's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2pgta2, region A:0-76 [Jmol] [rasmolscript] [script source]
        - Domain d2pgta1, region A:77-209 [Jmol] [rasmolscript] [script source]
        - Domain d2pgtb2, region B:1-76 [Jmol] [rasmolscript] [script source]
        - Domain d2pgtb1, region B:77-209 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pgt] [2pgt_B] [2pgt_A]
  • SWISS-PROT database: [P09211]
  • Domain organization of [GSTP1_HUMAN] by SWISSPFAM
  • Other resources with information on 2PGT
  • Community annotation for 2PGT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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