2QQ5 Oxidoreductase date Jul 26, 2007
title Crystal Structure Of Human Sdr Family Member 1
authors E.S.Pilka, V.Hozjan, E.Ugochukwu, F.Von Delft, M.Sundstrom, C.H.Arrowsmith, J.Weigelt, A.Edwards, U.Oppermann, Structural G Consortium (Sgc)
compound source
Molecule: Dehydrogenasereductase Sdr Family Member 1
Chain: A
Fragment: Residues 3-262
Synonym: Dhrs1
Ec: 1.1.-.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dhrs1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P11
symmetry Space Group: I 2 2 2
R_factor 0.157 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.225 87.854 100.583 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand
enzyme Oxidoreductase E.C.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (2qq5.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (2qq5.pdb2.gz) 76 Kb
  • Biological Unit Coordinates (2qq5.pdb3.gz) 151 Kb
  • CSU: Contacts of Structural Units for 2QQ5
  • Likely Quarternary Molecular Structure file(s) for 2QQ5
  • Structure Factors (1187 Kb)
  • Retrieve 2QQ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QQ5 from S2C, [Save to disk]
  • Re-refined 2qq5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2QQ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2QQ5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QQ5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qq5_A] [2qq5]
  • SWISS-PROT database: [Q96LJ7]
  • Domain organization of [DHRS1_HUMAN] by SWISSPFAM
  • Other resources with information on 2QQ5
  • Community annotation for 2QQ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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