2QQ8 Hydrolase Activator date Jul 26, 2007
title Crystal Structure Of The Putative Rabgap Domain Of Human Tbc Family Member 14
authors Y.Tong, W.Tempel, S.Dimov, R.Landry, C.H.Arrowsmith, A.M.Edwards, M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park, Structural Genomic Consortium (Sgc)
compound source
Molecule: Tbc1 Domain Family Member 14
Chain: A
Fragment: Putative Rabgap Domain: Residues 357-672
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tbc1d14, Kiaa1322
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Mhl
symmetry Space Group: P 43 21 2
R_factor 0.195 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.520 123.520 48.608 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand UNX enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (2qq8.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2QQ8
  • CSU: Contacts of Structural Units for 2QQ8
  • Structure Factors (893 Kb)
  • Retrieve 2QQ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QQ8 from S2C, [Save to disk]
  • Re-refined 2qq8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2QQ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2QQ8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2QQ8, from MSDmotif at EBI
  • Fold representative 2qq8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qq8_A] [2qq8]
  • SWISS-PROT database: [Q9P2M4]
  • Domain organization of [TBC14_HUMAN] by SWISSPFAM
  • Domain found in 2QQ8: [TBC ] by SMART
  • Other resources with information on 2QQ8
  • Community annotation for 2QQ8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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