2QV7	Transferase	date	Aug 07, 2007
title	Crystal Structure Of Diacylglycerol Kinase Dgkb In Complex W And Mg
authors	D.J.Miller, A.Jerga, C.O.Rock, S.W.White
compound		source
Molecule: Diacylglycerol Kinase Dgkb Chain: A Ec: 2.7.1.107 Engineered: Yes		Organism_scientific: Staphylococcus Aureus Gene: Sar1989 Expression_system: Escherichia Coli Expression_system_strain: Methionine Auxotroph B834 Expression_system_vector_type: Plasmid Expression_system_plasmid: Paj015
symmetry	Space Group: P 42 21 2	R_factor 0.206 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 123.760 123.760 47.680 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	ADP, MG, MSE	enzyme	Transferase E.C.2.7.1.107 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Analysis of the Staphylococcus aureus DgkB Structure Reveals a Common Catalytic Mechanism for the Soluble Diacylglycerol Kinases., Miller DJ, Jerga A, Rock CO, White SW, Structure. 2008 Jul;16(7):1036-46. PMID:18611377

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (2qv7.pdb1.gz) 51 Kb Biological Unit Coordinates (2qv7.pdb2.gz) 100 Kb LPC: Ligand-Protein Contacts for 2QV7 CSU: Contacts of Structural Units for 2QV7 Likely Quarternary Molecular Structure file(s) for 2QV7 Structure Factors (250 Kb) Retrieve 2QV7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2QV7 from S2C, [Save to disk] Re-refined 2qv7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2QV7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2QV7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2QV7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2qv7_A] [2qv7] SWISS-PROT database: [Q6GFF9] Domain organization of [DAGK_STAAR] by SWISSPFAM Domain found in 2QV7: [DAGKc ] by SMART

Other resources with information on 2QV7

Community annotation for 2QV7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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