2RVE THE CRYSTAL STRUCTURE OF ECORV ENDONUCLEASE AND OF ITS COMPLEXES WITH COGNATE AND NON-COGNATE DNA SEGMENTS date
authors Winkler, F.K., Banner, D.W., Oefner, C., Tsernoglou, D., Brown, R.S., Heathman, S.P., Bryan, R.K., Martin, P.D., Petratos, K., Wilson, K.S.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
related structures by homologous chain: 4RVE
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • endonuclease activity


  • Primary referenceThe crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments., Winkler FK, Banner DW, Oefner C, Tsernoglou D, Brown RS, Heathman SP, Bryan RK, Martin PD, Petratos K, Wilson KS, EMBO J 1993 May;12(5):1781-95. PMID:8491171
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (2rve.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (2rve.pdb2.gz) 44 Kb
  • CSU: Contacts of Structural Units for 2RVE
  • Likely Quarternary Molecular Structure file(s) for 2RVE
  • Retrieve 2RVE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RVE from S2C, [Save to disk]
  • View 2RVE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RVE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2RVE, from MSDmotif at EBI
  • Genome occurence of 2RVE's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2rvea_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2rveb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 2rve from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rve_A] [2rve_B] [2rve] [2rve_D] [2rve_F] [2rve_C] [2rve_E]
  • SWISS-PROT database: [P04390]
  • Domain organization of [T2E5_ECOLX] by SWISSPFAM
  • Other resources with information on 2RVE
  • Community annotation for 2RVE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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