4RVE Hydrolase Dna date Feb 18, 1993
title The Crystal Structure Of Ecorv Endonuclease And Of Its Complexes With Cognate And Non-Cognate Dna Segments
authors F.K.Winkler, D.W.Banner, C.Oefner, D.Tsernoglou, R.S.Brown, S.P.Heathman, R.K.Bryan, P.D.Martin, K.Petratos, K.S.Wilso
compound source
Molecule: Dna (5'-D(Gpgpgpaptpaptpcpcpc)-3')
Chain: D, E, F
Engineered: Yes
Synthetic: Yes

Molecule: Protein (Eco Rv (E.C.3.1.21.4))
Chain: A, B, C
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.200 78.400 371.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand
enzyme Hydrolase E.C.3.1.21.4 BRENDA
related structures by homologous chain: 1EOP, 2RVE
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • nuclease activity
  • endonuclease activity


  • Primary referenceThe crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments., Winkler FK, Banner DW, Oefner C, Tsernoglou D, Brown RS, Heathman SP, Bryan RK, Martin PD, Petratos K, Wilson KS, EMBO J 1993 May;12(5):1781-95. PMID:8491171
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (4rve.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (4rve.pdb2.gz) 89 Kb
  • CSU: Contacts of Structural Units for 4RVE
  • Likely Quarternary Molecular Structure file(s) for 4RVE
  • Retrieve 4RVE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RVE from S2C, [Save to disk]
  • View 4RVE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RVE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4RVE, from MSDmotif at EBI
  • Genome occurence of 4RVE's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d4rvea_, region A [Jmol] [rasmolscript] [script source]
        - Domain d4rveb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d4rvec_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 4rve from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rve] [4rve_F] [4rve_D] [4rve_A] [4rve_E] [4rve_C] [4rve_B]
  • SWISS-PROT database: [P04390]
  • Domain organization of [T2E5_ECOLX] by SWISSPFAM
  • Other resources with information on 4RVE
  • Community annotation for 4RVE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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