2SHP Tyrosine Phosphatase date Dec 01, 1997
title Tyrosine Phosphatase Shp-2
authors P.Hof, S.Pluskey, S.Dhe-Paganon, M.J.Eck, S.E.Shoelson
compound source
Molecule: Shp-2
Chain: A, B
Synonym: Syp, Shptp-2
Ec: 3.1.3.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.199 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.900 214.500 55.700 90.00 96.30 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CAT enzyme Hydrolase E.C.3.1.3.48 BRENDA
related structures by homologous chain: 1AYA
Primary referenceCrystal structure of the tyrosine phosphatase SHP-2., Hof P, Pluskey S, Dhe-Paganon S, Eck MJ, Shoelson SE, Cell 1998 Feb 20;92(4):441-50. PMID:9491886
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (238 Kb) [Save to disk]
  • Biological Unit Coordinates (2shp.pdb1.gz) 119 Kb
  • Biological Unit Coordinates (2shp.pdb2.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 2SHP
  • CSU: Contacts of Structural Units for 2SHP
  • Likely Quarternary Molecular Structure file(s) for 2SHP
  • Structure Factors (625 Kb)
  • Retrieve 2SHP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2SHP from S2C, [Save to disk]
  • Re-refined 2shp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2SHP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2SHP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2SHP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2shpa3, region A:111-218 [Jmol] [rasmolscript] [script source]
        - Domain d2shpa2, region A:2-110 [Jmol] [rasmolscript] [script source]
        - Domain d2shpa1, region A:219-525 [Jmol] [rasmolscript] [script source]
        - Domain d2shpb3, region B:111-218 [Jmol] [rasmolscript] [script source]
        - Domain d2shpb2, region B:2-110 [Jmol] [rasmolscript] [script source]
        - Domain d2shpb1, region B:219-525 [Jmol] [rasmolscript] [script source]
  • Fold representative 2shp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2shp_A] [2shp_B] [2shp]
  • SWISS-PROT database: [Q06124]
  • Domain organization of [PTN11_HUMAN] by SWISSPFAM
  • Domains found in 2SHP: [PTPc] [SH2 ] by SMART
  • Other resources with information on 2SHP
  • Community annotation for 2SHP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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