2UYY Cytokine date Apr 20, 2007
title Structure Of The Cytokine-Like Nuclear Factor N-Pac
authors J.Tickle, E.S.Pilka, G.Bunkoczi, G.Berridge, C.Smee, K.L.Kavanagh V.Hozjan, F.H.Niesen, E.Papagrigoriou, A.C.W.Pike, A.Turnbull, C.H.Arrowsmith, A.Edwards, M.Sundstrom, J.Weigelt, F.Von Delft, U.Oppermann
compound source
Molecule: N-Pac Protein
Chain: A, B, C, D
Fragment: Residues 192-484
Synonym: Cytokine-Like Nuclear Factor N-Pac
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: H 3
R_factor 0.170 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.180 134.180 261.463 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand K, NA7 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • Biological Unit Coordinates (2uyy.pdb1.gz) 181 Kb
  • LPC: Ligand-Protein Contacts for 2UYY
  • CSU: Contacts of Structural Units for 2UYY
  • Likely Quarternary Molecular Structure file(s) for 2UYY
  • Structure Factors (911 Kb)
  • Retrieve 2UYY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2UYY from S2C, [Save to disk]
  • Re-refined 2uyy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2UYY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2UYY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2UYY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2uyy_C] [2uyy_D] [2uyy_B] [2uyy_A] [2uyy]
  • SWISS-PROT database: [Q49A26]
  • Domain organization of [GLYR1_HUMAN] by SWISSPFAM
  • Other resources with information on 2UYY
  • Community annotation for 2UYY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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