2V70 Structural Protein date Jul 24, 2007
title Third Lrr Domain Of Human Slit2
authors C.Morlot, S.Cusack, A.A.Mccarthy
compound source
Molecule: Slit Homolog 2 Protein N-Product
Chain: A, B, C, D
Fragment: Third Lrr Domain, Residues 504-714
Synonym: Slit-2
Engineered: Yes
Other_details: Glycosylation On N623
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
Expression_system_vector_type: Modified Ptt3
symmetry Space Group: P 1 21 1
R_factor 0.222 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.650 96.860 87.150 90.00 95.32 90.00
method X-Ray Diffractionresolution 3.01 Å
ligand NAG enzyme
Primary referenceProduction of Slit2 LRR domains in mammalian cells for structural studies and the structure of human Slit2 domain 3., Morlot C, Hemrika W, Romijn RA, Gros P, Cusack S, McCarthy AA, Acta Crystallogr D Biol Crystallogr. 2007 Sep;63(Pt 9):961-8. Epub 2007, Aug 17. PMID:17704564
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (2v70.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (2v70.pdb2.gz) 34 Kb
  • Biological Unit Coordinates (2v70.pdb3.gz) 33 Kb
  • Biological Unit Coordinates (2v70.pdb4.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 2V70
  • CSU: Contacts of Structural Units for 2V70
  • Likely Quarternary Molecular Structure file(s) for 2V70
  • Structure Factors (275 Kb)
  • Retrieve 2V70 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V70 from S2C, [Save to disk]
  • Re-refined 2v70 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2V70 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2V70
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V70, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v70] [2v70_D] [2v70_C] [2v70_A] [2v70_B]
  • SWISS-PROT database: [O94813]
  • Domain organization of [SLIT2_HUMAN] by SWISSPFAM
  • Domains found in 2V70: [LRR] [LRRCT] [LRRNT] [LRR_TYP ] by SMART
    • Other resources with information on 2V70
  • Community annotation for 2V70 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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