2V9K Lyase date Aug 23, 2007
title Crystal Structure Of Human Pus10, A Novel Pseudouridine Synthase.
authors C.J.Mccleverty, M.Hornsby, G.Spraggon, A.Kreusch
compound source
Molecule: Uncharacterized Protein Flj32312
Chain: A
Synonym: Pseudouridine Synthase
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Prostate
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 32 2 1
R_factor 0.186 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.611 80.611 153.947 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.0 Å
ligand CL, EPE, GOL, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structure of Human Pus10, A Novel Pseudouridine Synthase., McCleverty CJ, Hornsby M, Spraggon G, Kreusch A, J Mol Biol. 2007 Aug 29;. PMID:17900615
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (2v9k.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 2V9K
  • CSU: Contacts of Structural Units for 2V9K
  • Likely Quarternary Molecular Structure file(s) for 2V9K
  • Structure Factors (502 Kb)
  • Retrieve 2V9K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V9K from S2C, [Save to disk]
  • Re-refined 2v9k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V9K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V9K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V9K, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v9k_A] [2v9k]
  • SWISS-PROT database: [Q3MIT2]
  • Domain organization of [PUS10_HUMAN] by SWISSPFAM
  • Other resources with information on 2V9K
  • Community annotation for 2V9K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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