2VC5 Hydrolase date Sep 18, 2007
title Structural Basis For Natural Lactonase And Promiscuous Phosphotriesterase Activities
authors M.Elias, J.Dupuy, L.Merone, L.Mandrich, S.Moniot, C.Lecomte, M.Ros P.Masson, G.Manco, E.Chabriere
compound source
Molecule: Aryldialkylphosphatase
Chain: A, B, C, D
Synonym: Ssopox, Phosphotriesterase, Paraoxonase, Php
Ec: 3.1.8.1
Engineered: Yes
 Organism_scientific: Sulfolobus Solfataricus
Organism_taxid: 2287
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.222 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.160 104.820 155.360 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand CO, EDO, FE, FE2, GOL, KCX enzyme Hydrolase E.C.3.1.8.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • aryldialkylphosphatase activ...


    • Primary referenceStructural basis for natural lactonase and promiscuous phosphotriesterase activities., Elias M, Dupuy J, Merone L, Mandrich L, Porzio E, Moniot S, Rochu D, Lecomte C, Rossi M, Masson P, Manco G, Chabriere E, J Mol Biol. 2008 Jun 20;379(5):1017-28. Epub 2008 Apr 16. PMID:18486146
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (213 Kb) [Save to disk]
  • Biological Unit Coordinates (2vc5.pdb1.gz) 105 Kb
  • Biological Unit Coordinates (2vc5.pdb2.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 2VC5
  • CSU: Contacts of Structural Units for 2VC5
  • Likely Quarternary Molecular Structure file(s) for 2VC5
  • Structure Factors (616 Kb)
  • Retrieve 2VC5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VC5 from S2C, [Save to disk]
  • Re-refined 2vc5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VC5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VC5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VC5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vc5_B] [2vc5_C] [2vc5] [2vc5_D] [2vc5_A]
  • SWISS-PROT database: [Q97VT7]
  • Domain organization of [PHP_SULSO] by SWISSPFAM
    • Other resources with information on 2VC5
  • Community annotation for 2VC5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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