2VDF		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	OCT, SO4	enzyme
Gene Ontology	Chain Function Process Component A aspartic-type endopeptidase ...
Primary reference	In meso crystal structure and docking simulations suggest an alternative proteoglycan binding site in the OpcA outer membrane adhesin., Cherezov V, Liu W, Derrick JP, Luan B, Aksimentiev A, Katritch V, Caffrey M, Proteins. 2007 Dec 12;. PMID:18076035

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (2vdf.pdb1.gz) 75 Kb LPC: Ligand-Protein Contacts for 2VDF CSU: Contacts of Structural Units for 2VDF Likely Quarternary Molecular Structure file(s) for 2VDF Structure Factors (134 Kb) Retrieve 2VDF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VDF from S2C, [Save to disk] Re-refined 2vdf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VDF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vdf] [2vdf_A] SWISS-PROT database: [Q9AE79]

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