2VEO Hydrolase date Oct 25, 2007
title X-Ray Structure Of Candida Antarctica Lipase A In Its Close
authors D.J.Ericsson, A.Kasrayan, P.Johansson, T.Bergfors, A.G.Sandstrom, J.E.Backvall, S.L.Mowbray
compound source
Molecule: Lipase A
Chain: A, B
Fragment: Residues 88-528
Engineered: Yes
Organism_scientific: Pseudozyma Antarctica
Organism_taxid: 34362
Atcc: Dsm70725
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: X33
Expression_system_plasmid: Ppiczalpha-C
Other_details: Candida Antarctica Reclassified As Pseudozyma Aphidis In 2006.
symmetry Space Group: P 43 21 2
R_factor 0.190 R_Free 0.221
length a length b length c angle alpha angle beta angle gamma
91.539 91.539 299.842 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand GOL, IUM, PG4 enzyme Hydrolase E.C. BRENDA
A, B

Primary referenceX-ray structure of Candida antarctica lipase A shows a novel lid structure and a likely mode of interfacial activation., Ericsson DJ, Kasrayan A, Johansson P, Bergfors T, Sandstrom AG, Backvall JE, Mowbray SL, J Mol Biol. 2008 Feb 8;376(1):109-19. Epub 2007 Nov 6. PMID:18155238
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (2veo.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (2veo.pdb2.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 2VEO
  • CSU: Contacts of Structural Units for 2VEO
  • Likely Quarternary Molecular Structure file(s) for 2VEO
  • Structure Factors (889 Kb)
  • Retrieve 2VEO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VEO from S2C, [Save to disk]
  • Re-refined 2veo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VEO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VEO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VEO, from MSDmotif at EBI
  • Fold representative 2veo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2veo_A] [2veo] [2veo_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2VEO
  • Community annotation for 2VEO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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