2VIG Oxidoreductase date Nov 30, 2007
title Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenas
authors A.C.W.Pike, N.Pantic, E.Parizotto, O.Gileadi, E.Ugochukwu, F.Von J.Weigelt, C.H.Arrowsmith, A.Edwards, U.Oppermann
compound source
Molecule: Short-Chain Specific Acyl-Coa Dehydrogenase,
Chain: A, B, C, D, E, F, G, H
Fragment: Residues 30-412
Synonym: Scad, Butyryl-Coa Dehydrogenase, Acyl Coa Dehydrog
Ec: 1.3.99.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_plasmid: Pnic-Cthf
symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.714 157.620 260.843 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand COS, EDO, FAD enzyme Oxidoreductase E.C.1.3.99.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G
  • acyl-CoA dehydrogenase activ...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (494 Kb) [Save to disk]
  • Biological Unit Coordinates (2vig.pdb1.gz) 244 Kb
  • Biological Unit Coordinates (2vig.pdb2.gz) 246 Kb
  • LPC: Ligand-Protein Contacts for 2VIG
  • CSU: Contacts of Structural Units for 2VIG
  • Likely Quarternary Molecular Structure file(s) for 2VIG
  • Structure Factors (3793 Kb)
  • Retrieve 2VIG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VIG from S2C, [Save to disk]
  • Re-refined 2vig structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VIG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VIG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VIG, from MSDmotif at EBI
  • Fold representative 2vig from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vig_A] [2vig_C] [2vig_F] [2vig_G] [2vig_H] [2vig_E] [2vig_B] [2vig_D] [2vig]
  • SWISS-PROT database: [P16219]
  • Domain organization of [ACADS_HUMAN] by SWISSPFAM
  • Other resources with information on 2VIG
  • Community annotation for 2VIG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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