2VNS Oxidoreductase date Feb 07, 2008
title Crystal Structure Of The Membrane Proximal Oxidoreductase Domain Of Human Steap3, The Dominant Ferric Reductase Of The Erythroid Transferrin Cycle
authors A.K.Sendamarai, R.S.Ohgami, M.D.Fleming, C.M.Lawrence
compound source
Molecule: Metalloreductase Steap3
Chain: A, B
Fragment: Nadphflavin Dependent Oxidoreductase, Residues 1-215;
Synonym: Six-Transmembrane Epithelial Antigen Of Prostate 3, Tumor Suppressor-Activated Pathway Protein 6, Htsap6, Phyde, Hphyde, Dudulin-2, Steap3 Dimer;
Ec: 1.16.1.2
Engineered: Yes
Other_details: Residues 1-215 Cloned
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Kidney, Renal Cell Adenocarcinoma
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest14
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.686 66.812 143.366 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.0 Å
ligand CIT enzyme Oxidoreductase E.C.1.16.1.2 BRENDA
Primary referenceStructure of the membrane proximal oxidoreductase domain of human Steap3, the dominant ferrireductase of the erythroid transferrin cycle., Sendamarai AK, Ohgami RS, Fleming MD, Lawrence CM, Proc Natl Acad Sci U S A. 2008 May 27;105(21):7410-5. Epub 2008 May 21. PMID:18495927
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (2vns.pdb1.gz) 115 Kb
  • LPC: Ligand-Protein Contacts for 2VNS
  • CSU: Contacts of Structural Units for 2VNS
  • Likely Quarternary Molecular Structure file(s) for 2VNS
  • Structure Factors (323 Kb)
  • Retrieve 2VNS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VNS from S2C, [Save to disk]
  • Re-refined 2vns structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VNS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VNS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VNS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vns_B] [2vns_A] [2vns]
  • SWISS-PROT database: [Q658P3]
  • Belongs to the transmembrane epithelial antigen protien-3 ferric reductase (steap) family according to TCDB.
  • Domain organization of [STEA3_HUMAN] by SWISSPFAM
  • Other resources with information on 2VNS
  • Community annotation for 2VNS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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