2VPJ Protein Binding date Feb 29, 2008
title Crystal Structure Of The Kelch Domain Of Human Klhl12
authors T.Keates, A.C.W.Pike, A.N.Bullock, E.Salah, P.Filippakopoulos, A. F.Von Delft, P.Savitsky, J.Weigelt, A.Edwards, C.H.Arrowsmith, C S.Knapp
compound source
Molecule: Kelch-Like Protein 12
Chain: A
Fragment: Kelch Domain, Residues 268-567
Synonym: Cul3-Interacting Protein 1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.161 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.637 61.546 45.523 90.00 111.75 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand ACT enzyme
Primary referenceStructural basis for Cul3 assembly with the BTB-Kelch family of E3 ubiquitin ligases., Canning P, Cooper CD, Krojer T, Murray JW, Pike AC, Chaikuad A, Keates T, Thangaratnarajah C, Hojzan V, Marsden BD, Gileadi O, Knapp S, von Delft F, Bullock AN, J Biol Chem. 2013 Jan 24. PMID:23349464
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (2vpj.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 2VPJ
  • CSU: Contacts of Structural Units for 2VPJ
  • Likely Quarternary Molecular Structure file(s) for 2VPJ
  • Structure Factors (254 Kb)
  • Retrieve 2VPJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VPJ from S2C, [Save to disk]
  • Re-refined 2vpj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VPJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VPJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VPJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vpj] [2vpj_A]
  • SWISS-PROT database: [Q53G59]
  • Domain organization of [KLH12_HUMAN] by SWISSPFAM
  • Domain found in 2VPJ: [Kelch ] by SMART
    • Other resources with information on 2VPJ
  • Community annotation for 2VPJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science