2VR2 Hydrolase date Mar 25, 2008
title Human Dihydropyrimidinase
authors M.Welin, T.Karlberg, J.Andersson, C.H.Arrowsmith, H.Berglund, R.D R.Collins, L.G.Dahlgren, A.M.Edwards, S.Flodin, A.Flores, S.Gras M.Hammarstrom, M.D.Herman, I.Johansson, A.Kallas, T.Kotenyova, L M.Moche, M.E.Nilsson, T.Nyman, C.Persson, J.Sagemark, L.Svensson A.G.Thorsell, L.Tresaugues, S.Van Den Berg, J.Weigelt, M.Wikstr P.Nordlund, Structural Genomics Consortium (Sgc)
compound source
Molecule: Dihydropyrimidinase
Chain: A
Synonym: Dhpase, Dhp, Dihydropyrimidine Amidohydrolase, Hyd
Ec: 3.5.2.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector: Pnic-Bsa4
symmetry Space Group: P 64 2 2
R_factor 0.200 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.650 89.650 219.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand CL, ZN enzyme Hydrolase E.C.3.5.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (2vr2.pdb1.gz) 280 Kb
  • LPC: Ligand-Protein Contacts for 2VR2
  • CSU: Contacts of Structural Units for 2VR2
  • Likely Quarternary Molecular Structure file(s) for 2VR2
  • Structure Factors (101 Kb)
  • Retrieve 2VR2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VR2 from S2C, [Save to disk]
  • Re-refined 2vr2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VR2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VR2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VR2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vr2] [2vr2_A]
  • SWISS-PROT database: [Q14117]
  • Domain organization of [DPYS_HUMAN] by SWISSPFAM
  • Other resources with information on 2VR2
  • Community annotation for 2VR2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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