2VSK	Hydrolase	date	Apr 24, 2008
title	Hendra Virus Attachment Glycoprotein In Complex With Human C Surface Receptor Ephrinb2
authors	T.A.Bowden, A.R.Aricescu, R.J.Gilbert, J.M.Grimes, E.Y.Jones, D.I
compound		source
Molecule: Hemagglutinin-Neuraminidase Chain: A, C Fragment: B-Propeller, Ephrin Binding Domain, Residues 188- Synonym: Hev-G Ec: 3.2.1.18 Engineered: Yes		Organism_scientific: Hendra Virus Organism_taxid: 63330 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_plasmid: Phlsec Other_details: Synthetically Optimized Cdna (Geneart)
Molecule: Ephrin-B2 Chain: B, D Fragment: Receptor-Binding Domain, Residues 28-165 Synonym: Efnb2, Eph-Related Receptor Tyrosine Kinase Ligand 5, Htk Ligand, Htk-L; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_plasmid: Phlsec
symmetry	Space Group: P 21 21 21	R_factor 0.300 R_Free 0.350
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.250 106.170 196.160 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.30 Å
ligand		enzyme	Hydrolase E.C.3.2.1.18 BRENDA
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Structural basis of Nipah and Hendra virus attachment to their cell-surface receptor ephrin-B2., Bowden TA, Aricescu AR, Gilbert RJ, Grimes JM, Jones EY, Stuart DI, Nat Struct Mol Biol. 2008 Jun;15(6):567-72. Epub 2008 May 18. PMID:18488039

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (339 Kb) [Save to disk] Biological Unit Coordinates (2vsk.pdb1.gz) 167 Kb Biological Unit Coordinates (2vsk.pdb2.gz) 170 Kb CSU: Contacts of Structural Units for 2VSK Likely Quarternary Molecular Structure file(s) for 2VSK Structure Factors (148 Kb) Retrieve 2VSK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VSK from S2C, [Save to disk] Re-refined 2vsk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VSK in 3D

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Visual 3D analysis of 2VSK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VSK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vsk_C] [2vsk_D] [2vsk_B] [2vsk] [2vsk_A] SWISS-PROT database: [P52799] [O89343] Domain organization of [EFNB2_HUMAN] [GLYCP_HENDV] by SWISSPFAM

Other resources with information on 2VSK

Community annotation for 2VSK at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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