2VXP Cell Adhesion date Jul 08, 2008
title The Fourth Fas1 Domain Structure Of Human Bigh3
authors J.H.Yoo, H.S.Cho
compound source
Molecule: Transforming Growth Factor-Beta-Induced Protein Ig-H3;
Chain: A, B
Fragment: Fourth Fas1 Domain, Residues 502-633
Synonym: Beta Ig-H3, Kerato-Epithelin, Rgd-Containing Collagen-Associated Protein, Rgd-Cap;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Prset(A)
symmetry Space Group: P 65
R_factor 0.270 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.934 62.934 143.290 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.5 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (2vxp.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (2vxp.pdb2.gz) 21 Kb
  • CSU: Contacts of Structural Units for 2VXP
  • Likely Quarternary Molecular Structure file(s) for 2VXP
  • Structure Factors (189 Kb)
  • Retrieve 2VXP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VXP from S2C, [Save to disk]
  • Re-refined 2vxp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VXP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VXP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VXP, from MSDmotif at EBI
  • Fold representative 2vxp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vxp_B] [2vxp] [2vxp_A]
  • SWISS-PROT database: [Q15582]
  • Domain organization of [BGH3_HUMAN] by SWISSPFAM
  • Domain found in 2VXP: [FAS1 ] by SMART
  • Alignments of the sequence of 2VXP with the sequences similar proteins can be viewed for 2VXP's classification [BGH3_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [BGH3_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2VXP
  • Community annotation for 2VXP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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