2VZ6 Transferase date Jul 30, 2008
title Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type II Alpha (Camk2a) In Complex With Indirubin E804
authors A.C.W.Pike, P.Rellos, O.King, E.Salah, E.Parizotto, O.Fedorov, L.S N.Burgess-Brown, A.Roos, J.W.Murray, F.Von Delft, A.Edwards, C.H.Arrowsmith, M.Wikstroem, C.Bountra, S.Knapp
compound source
Molecule: Calcium Calmodulin Dependent Protein Kinase Type Chain;
Chain: A, B
Fragment: Kinase Domain, Residues 13-302
Synonym: Cam-Kinase II Alpha Chain, Cam Kinase II Subunit A Camk-II Subunit Alpha;
Ec: 2.7.11.17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.163 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.244 113.621 131.868 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.3 Å
ligand FEF, PGO enzyme Transferase E.C.2.7.11.17 BRENDA
Primary referenceStructure of the CaMKIIdelta/calmodulin complex reveals the molecular mechanism of CaMKII kinase activation., Rellos P, Pike AC, Niesen FH, Salah E, Lee WH, von Delft F, Knapp S, PLoS Biol. 2010 Jul 27;8(7):e1000426. PMID:20668654
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (2vz6.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (2vz6.pdb2.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 2VZ6
  • CSU: Contacts of Structural Units for 2VZ6
  • Likely Quarternary Molecular Structure file(s) for 2VZ6
  • Structure Factors (696 Kb)
  • Retrieve 2VZ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VZ6 from S2C, [Save to disk]
  • Re-refined 2vz6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VZ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VZ6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VZ6, from MSDmotif at EBI
  • Fold representative 2vz6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vz6_A] [2vz6] [2vz6_B]
  • SWISS-PROT database: [Q9UQM7]
  • Domain organization of [KCC2A_HUMAN] by SWISSPFAM
  • Domain found in 2VZ6: [S_TKc ] by SMART
  • Alignments of the sequence of 2VZ6 with the sequences similar proteins can be viewed for 2VZ6's classification [KCC2A_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [KCC2A_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2VZ6
  • Community annotation for 2VZ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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