2VZD Cell Adhesion date Jul 31, 2008
title Crystal Structure Of The C-Terminal Calponin Homology Domain Of Alpha Parvin In Complex With Paxillin Ld1 Motif
authors S.Lorenz, I.Vakonakis, E.D.Lowe, I.D.Campbell, M.E.M.Noble, M.K.H
compound source
Molecule: Alpha-Parvin
Chain: A, B
Fragment: C-Terminal Calponin Homology Domain, Residues 242
Synonym: Calponin-Like Integrin-Linked Kinase-Binding Prote Ch-Ilkbp, Matrix-Remodeling-Associated Protein 2, Actopaxi
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pgex-6p1

Molecule: Paxillin
Chain: C, D
Fragment: Paxillin Ld1 Motif, Residues 1-20
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.217 R_Free 0.255
length a length b length c angle alpha angle beta angle gamma
133.123 37.503 70.244 90.00 90.33 90.00
method X-Ray Diffractionresolution 2.1 Å
ligand EDO, GOL, PG4, PGE enzyme
A, B

Primary referenceStructural analysis of the interactions between paxillin LD motifs and alpha-parvin., Lorenz S, Vakonakis I, Lowe ED, Campbell ID, Noble ME, Hoellerer MK, Structure. 2008 Oct 8;16(10):1521-31. PMID:18940607
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (2vzd.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (2vzd.pdb2.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2VZD
  • CSU: Contacts of Structural Units for 2VZD
  • Likely Quarternary Molecular Structure file(s) for 2VZD
  • Structure Factors (153 Kb)
  • Retrieve 2VZD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VZD from S2C, [Save to disk]
  • Re-refined 2vzd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VZD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VZD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VZD, from MSDmotif at EBI
  • Fold representative 2vzd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vzd_C] [2vzd_A] [2vzd] [2vzd_D] [2vzd_B]
  • SWISS-PROT database: [Q9NVD7] [P49023]
  • Domain organization of [PARVA_HUMAN] [PAXI_HUMAN] by SWISSPFAM
  • Domain found in 2VZD: [CH ] by SMART
  • Other resources with information on 2VZD
  • Community annotation for 2VZD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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