2W9Z Transferase date Jan 30, 2009
title Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
authors P.J.Day, A.Cleasby, I.J.Tickle, M.O.Reilly, J.E.Coyle, F.P.Holdin R.L.Mcmenamin, J.Yon, R.Chopra, C.Lengauer, H.Jhoti
compound source
Molecule: G1s-Specific Cyclin-D1
Chain: A
Fragment: Residues 16-271
Synonym: Prad1 Oncogene, Bcl-1 Oncogene, D-Type Cyclin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector_type: Baculovirus

Molecule: Cell Division Protein Kinase 4
Chain: B
Synonym: Cyclin-Dependent Kinase 4, Psk-J3, Cdk4
Ec: 2.7.11.22
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.225 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.198 65.011 188.699 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand
enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • cyclin-dependent protein ser...


  • Primary referenceCrystal structure of human CDK4 in complex with a D-type cyclin., Day PJ, Cleasby A, Tickle IJ, O'Reilly M, Coyle JE, Holding FP, McMenamin RL, Yon J, Chopra R, Lengauer C, Jhoti H, Proc Natl Acad Sci U S A. 2009 Feb 23. PMID:19237565
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (2w9z.pdb1.gz) 91 Kb
  • CSU: Contacts of Structural Units for 2W9Z
  • Likely Quarternary Molecular Structure file(s) for 2W9Z
  • Structure Factors (1268 Kb)
  • Retrieve 2W9Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W9Z from S2C, [Save to disk]
  • Re-refined 2w9z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W9Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W9Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2W9Z, from MSDmotif at EBI
  • Fold representative 2w9z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w9z] [2w9z_B] [2w9z_A]
  • SWISS-PROT database: [P24385] [P11802]
  • Domain organization of [CCND1_HUMAN] [CDK4_HUMAN] by SWISSPFAM
  • Domains found in 2W9Z: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 2W9Z
  • Community annotation for 2W9Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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