2WNV Immune System date Jul 20, 2009
title Complex Between C1q Globular Heads And Deoxyribose
authors V.Garlatti, A.Chouquet, T.Lunardi, N.M.Thielens, G.J.Arlaud, C.Gaboriaud
compound source
Molecule: Complement C1q Subcomponent Subunit A
Chain: A, D
Fragment: C-Terminal Globular Region, Residues 112-245
Synonym: C1q Chain A
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Complement C1q Subcomponent Subunit B
Chain: B, E
Fragment: C Terminal Globular Domain, Residues 116-251
Synonym: C1q Chain B

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Complement C1q Subcomponent Subunit C
Chain: C, F
Fragment: C Terminal Globular Domain, Residues 115-245
Synonym: C1q Chain C

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor 0.17496 R_Free 0.20176
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.350 48.330 88.060 92.39 92.60 113.57
method X-Ray Diffractionresolution 1.25 Å
ligand 2DR, CA, NAG enzyme
note 2WNV is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


Primary referenceCutting Edge: C1q Binds Deoxyribose and Heparan Sulfate through Neighboring Sites of Its Recognition Domain., Garlatti V, Chouquet A, Lunardi T, Vives R, Paidassi H, Lortat-Jacob H, Thielens NM, Arlaud GJ, Gaboriaud C, J Immunol. 2010 Jun 14. PMID:20548024
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (299 Kb) [Save to disk]
  • Biological Unit Coordinates (2wnv.pdb1.gz) 148 Kb
  • Biological Unit Coordinates (2wnv.pdb2.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 2WNV
  • CSU: Contacts of Structural Units for 2WNV
  • Structure Factors (1172 Kb)
  • Retrieve 2WNV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WNV from S2C, [Save to disk]
  • Re-refined 2wnv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WNV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WNV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WNV, from MSDmotif at EBI
  • Fold representative 2wnv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wnv_D] [2wnv_C] [2wnv_A] [2wnv] [2wnv_F] [2wnv_B] [2wnv_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2WNV: [C1Q ] by SMART
  • Other resources with information on 2WNV
  • Community annotation for 2WNV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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