2Y0M Transcription date Dec 03, 2010
title Crystal Structure Of The Complex Between Dosage Compensation Msl1 And Mof
authors J.Kadlec, E.Hallacli, M.Lipp, H.Holz, J.Sanchez Weatherby, S.Cusa A.Akhtar
compound source
Molecule: Probable Histone Acetyltransferase Myst1
Chain: A
Fragment: Hat Domain, Residues 174-458
Synonym: Myst-1, Moz, Ybf2sas3, Sas2 And Tip60 Protein 1,
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Eschericha Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_vector: Prsfduet-1

Molecule: Male-Specific Lethal 1 Homolog
Chain: B
Fragment: Pehe Domain, Residues 470-540
Synonym: Msl-1, Hampin, Male-Specific Lethal 1-Like 1, Msl1 Male-Specific Lethal-1 Homolog 1, Msl1;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Eschericha Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_vector: Pproexhtb
symmetry Space Group: I 41 2 2
R_factor 0.223 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
180.940 180.940 80.750 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand ACO, ALY, CSO, ZN enzyme
note 2Y0M is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis for MOF and MSL3 recruitment into the dosage compensation complex by MSL1., Kadlec J, Hallacli E, Lipp M, Holz H, Sanchez-Weatherby J, Cusack S, Akhtar A, Nat Struct Mol Biol. 2011 Feb;18(2):142-9. Epub 2011 Jan 9. PMID:21217699
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (2y0m.pdb1.gz) 438 Kb
  • LPC: Ligand-Protein Contacts for 2Y0M
  • CSU: Contacts of Structural Units for 2Y0M
  • Structure Factors (266 Kb)
  • Retrieve 2Y0M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y0M from S2C, [Save to disk]
  • Re-refined 2y0m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y0M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y0M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Y0M, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y0m_A] [2y0m] [2y0m_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2Y0M: [PEHE ] by SMART
  • Other resources with information on 2Y0M
  • Community annotation for 2Y0M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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