2Y3P date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA crystal structure of the bifunctional antibiotic simocyclinone D8, bound to DNA gyrase., Edwards MJ, Flatman RH, Mitchenall LA, Stevenson CE, Le TB, Clarke TA, McKay AR, Fiedler HP, Buttner MJ, Lawson DM, Maxwell A, Science. 2009 Dec 4;326(5958):1415-8. PMID:19965760
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (325 Kb) [Save to disk]
  • Biological Unit Coordinates (2y3p.pdb1.gz) 630 Kb
  • CSU: Contacts of Structural Units for 2Y3P
  • Structure Factors (1542 Kb)
  • Retrieve 2Y3P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y3P from S2C, [Save to disk]
  • Re-refined 2y3p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y3P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y3p] [2y3p_A] [2y3p_B]
  • SWISS-PROT database:
  • Domain found in 2Y3P: [TOP4c ] by SMART

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