2Y7J Transferase date Jan 31, 2011
title Structure Of Human Phosphorylase Kinase, Gamma 2
authors J.R.C.Muniz, A.Shrestha, P.Savitsky, J.Wang, P.Rellos, O.Fedorov, N.Burgess-Brown, B.Brenner, G.Berridge, J.M.Elkins, T.Krojer, M. K.H.Che, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C. S.Knapp
compound source
Molecule: Phosphorylase B Kinase Gamma Catalytic Chain, Testisliver Isoform;
Chain: A, B, C, D
Fragment: Residues 6-293
Synonym: Phosphorylase Kinase Gamma 2, Phk-Gamma-T, Psk-C3, Phosphorylase Kinase Subunit Gamma-2;
Ec: 2.7.11.19
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R-La
Expression_system_vector: Pnic-Zb
symmetry Space Group: P 21 21 21
R_factor 0.1819 R_Free 0.2159
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.790 91.420 164.480 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand B49 BindingDB enzyme Transferase E.C.2.7.11.19 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (396 Kb) [Save to disk]
  • Biological Unit Coordinates (2y7j.pdb1.gz) 383 Kb
  • LPC: Ligand-Protein Contacts for 2Y7J
  • CSU: Contacts of Structural Units for 2Y7J
  • Structure Factors (2436 Kb)
  • Retrieve 2Y7J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y7J from S2C, [Save to disk]
  • Re-refined 2y7j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y7J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y7J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Y7J, from MSDmotif at EBI
  • Fold representative 2y7j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y7j_A] [2y7j_D] [2y7j_C] [2y7j_B] [2y7j]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2Y7J: [S_TKc ] by SMART
  • Other resources with information on 2Y7J
  • Community annotation for 2Y7J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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