2Y7J Transferase date Jan 31, 2011
title Structure Of Human Phosphorylase Kinase, Gamma 2
authors J.R.C.Muniz, A.Shrestha, P.Savitsky, J.Wang, P.Rellos, O.Fedorov, N.Burgess-Brown, B.Brenner, G.Berridge, J.M.Elkins, T.Krojer, M. K.H.Che, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C. S.Knapp
compound source
Molecule: Phosphorylase B Kinase Gamma Catalytic Chain, Testisliver Isoform;
Chain: A, B, C, D
Fragment: Residues 6-293
Synonym: Phosphorylase Kinase Gamma 2, Phk-Gamma-T, Psk-C3, Phosphorylase Kinase Subunit Gamma-2;
Ec: 2.7.11.19
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R-La
Expression_system_vector: Pnic-Zb
symmetry Space Group: P 21 21 21
R_factor 0.1819 R_Free 0.2159
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.790 91.420 164.480 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand B49 BindingDB enzyme Transferase E.C.2.7.11.19 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (396 Kb) [Save to disk]
  • Biological Unit Coordinates (2y7j.pdb1.gz) 383 Kb
  • LPC: Ligand-Protein Contacts for 2Y7J
  • CSU: Contacts of Structural Units for 2Y7J
  • Structure Factors (2436 Kb)
  • Retrieve 2Y7J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y7J from S2C, [Save to disk]
  • Re-refined 2y7j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y7J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y7J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Y7J, from MSDmotif at EBI
  • Fold representative 2y7j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y7j_A] [2y7j_D] [2y7j_C] [2y7j_B] [2y7j]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2Y7J with the sequences similar proteins can be viewed for 2Y7J's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2Y7J
  • Community annotation for 2Y7J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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