2Y7L Cell Adhesion date Jan 31, 2011
title Structure Of N-Terminal Domain Of Candida Albicans Als9-2 In Complex With Human Fibrinogen Gamma Peptide
authors P.S.Salgado, E.Cota
compound source
Molecule: Agglutinin-Like Als9 Protein
Chain: A
Fragment: N-Terminal Domain, Residues 18-328
Synonym: Nt_als9-2
Engineered: Yes
Organism_scientific: Candida Albicans
Organism_taxid: 5476
Expression_system: Escherichia Coli
Expression_system_taxid: 83333
Expression_system_strain: K-12
Expression_system_variant: Origami
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32 Xalic

Molecule: Fibrinogen Gamma Chain, Isoform Cra_a
Chain: B
Fragment: Residues 318-334

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.19633 R_Free 0.22429
length a length b length c angle alpha angle beta angle gamma
35.581 69.273 122.223 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.49 Å
note 2Y7L is a representative structure

Primary referenceStructural basis for the broad specificity to host-cell ligands by the pathogenic fungus Candida albicans., Salgado PS, Yan R, Taylor JD, Burchell L, Jones R, Hoyer LL, Matthews SJ, Simpson PJ, Cota E, Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):15775-9. Epub 2011 Sep 6. PMID:21896717
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (2y7l.pdb1.gz) 56 Kb
  • CSU: Contacts of Structural Units for 2Y7L
  • Structure Factors (1126 Kb)
  • Retrieve 2Y7L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y7L from S2C, [Save to disk]
  • Re-refined 2y7l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y7L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y7L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Y7L, from MSDmotif at EBI
  • Fold representative 2y7l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y7l_A] [2y7l_B] [2y7l]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2Y7L: [Candida_ALS_N ] by SMART
  • Other resources with information on 2Y7L
  • Community annotation for 2Y7L at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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