2YBB date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CA, CDL, CU, FES, FMN, HEA, HEC, HEM, MG, NAI, SF4, SMA, UQ1, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
1


2


3


4


5


6


7


8


A, a


B, b


D, d


F, f


H, h


I, i


L


M
  • cytochrome-c oxidase activit...


  • N
  • cytochrome-c oxidase activit...
  • oxidoreduction-driven active...


  • O


    P


    Q


    R


    S


    T
  • cytochrome-c oxidase activit...


  • U


    V


    W


    X


    Y


    c, C


    e, E


    g, G


    j, J


    k, K
  • ubiquinol-cytochrome-c reduc...


  • Primary referenceArrangement of electron transport chain components in bovine mitochondrial supercomplex I(1)III(2)IV(1)., Althoff T, Mills DJ, Popot JL, Kuhlbrandt W, EMBO J. 2011 Sep 9. doi: 10.1038/emboj.2011.324. PMID:21909073
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1443 Kb) [Save to disk]
  • Biological Unit Coordinates (2ybb.pdb1.gz) 1421 Kb
  • LPC: Ligand-Protein Contacts for 2YBB
  • CSU: Contacts of Structural Units for 2YBB
  • Retrieve 2YBB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YBB from S2C, [Save to disk]
  • View 2YBB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ybb] [2ybb_1] [2ybb_2] [2ybb_3] [2ybb_4] [2ybb_5] [2ybb_6] [2ybb_7] [2ybb_8] [2ybb_A] [2ybb_B] [2ybb_C] [2ybb_D] [2ybb_E] [2ybb_F] [2ybb_G] [2ybb_H] [2ybb_I] [2ybb_J] [2ybb_K] [2ybb_L] [2ybb_M] [2ybb_N] [2ybb_O] [2ybb_P] [2ybb_Q] [2ybb_R] [2ybb_S] [2ybb_T] [2ybb_U] [2ybb_V] [2ybb_W] [2ybb_X] [2ybb_Y] [2ybb_a] [2ybb_b] [2ybb_c] [2ybb_d] [2ybb_e] [2ybb_f] [2ybb_g] [2ybb_h] [2ybb_i] [2ybb_j] [2ybb_k] [2ybb_m] [2ybb_n] [2ybb_o] [2ybb_p]
  • SWISS-PROT database:
  • Domains found in 2YBB: [Molybdop_Fe4S4] [NADH-G_4Fe-4S_3] [NADH_4Fe-4S ] by SMART

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