2YBO		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	SAH	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of the heme d1 biosynthesis enzyme NirE in complex with its substrate reveals new insights into the catalytic mechanism of S-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferases., Storbeck S, Saha S, Krausze J, Klink BU, Heinz DW, Layer G, J Biol Chem. 2011 Jul 29;286(30):26754-67. Epub 2011 May 31. PMID:21632530

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk] Biological Unit Coordinates (2ybo.pdb1.gz) 157 Kb LPC: Ligand-Protein Contacts for 2YBO CSU: Contacts of Structural Units for 2YBO Structure Factors (150 Kb) Retrieve 2YBO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YBO from S2C, [Save to disk] Re-refined 2ybo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YBO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ybo] [2ybo_A] SWISS-PROT database:

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