2YFE	Receptor	date	Apr 05, 2011
title	Ligand Binding Domain Of Human Ppar Gamma In Complex With Am
authors	J.C.De Groot, K.Buessow
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Ligand Binding Domain, Residues 195-477 Synonym: Ppar-Gamma, Nuclear Receptor Subfamily 1 Group C M Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: C 1 2 1	R_factor 0.204 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.810 61.100 118.220 90.00 102.78 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	YFE	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Amorfrutins are potent antidiabetic dietary natural products., Weidner C, de Groot JC, Prasad A, Freiwald A, Quedenau C, Kliem M, Witzke A, Kodelja V, Han CT, Giegold S, Baumann M, Klebl B, Siems K, Muller-Kuhrt L, Schurmann A, Schuler R, Pfeiffer AF, Schroeder FC, Bussow K, Sauer S, Proc Natl Acad Sci U S A. 2012 Apr 16. PMID:22509006

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk] Biological Unit Coordinates (2yfe.pdb1.gz) 92 Kb Biological Unit Coordinates (2yfe.pdb2.gz) 93 Kb LPC: Ligand-Protein Contacts for 2YFE CSU: Contacts of Structural Units for 2YFE Structure Factors (589 Kb) Retrieve 2YFE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YFE from S2C, [Save to disk] Re-refined 2yfe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YFE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YFE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YFE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yfe] [2yfe_B] [2yfe_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2YFE: [HOLI ] by SMART

Other resources with information on 2YFE

Community annotation for 2YFE at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---