2YP5	Viral Protein	date	Oct 29, 2012
title	Haemagglutinin Of 2004 Human H3n2 Virus In Complex With Avia Analogue 3sln
authors	X.Xiong, Y.P.Lin, S.A.Wharton, S.R.Martin, P.J.Coombs, S.G.Vachie E.Christodoulou, P.A.Walker, J.Liu, J.J.Skehel, S.J.Gamblin, A.J R.S.Daniels, J.W.Mccauley
compound		source
Molecule: Hemagglutinin Chain: A Fragment: Trypsin Released Ectodomain, Residues 17-519 Synonym: Haemagglutinin Engineered: Yes Mutation: Yes		Organism_scientific: Influenza A Virus (Afinland4862004 Organism_taxid: 348682 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pacgp67a
symmetry	Space Group: H 3 2	R_factor 0.172 R_Free 0.196
crystal cell	length a length b length c angle alpha angle beta angle gamma 100.860 100.860 386.530 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.79 Å
ligand	EPE, GAL, MAN, NAG, SIA, TAM	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Evolution of the receptor binding properties of the influenza A(H3N2) hemagglutinin., Lin YP, Xiong X, Wharton SA, Martin SR, Coombs PJ, Vachieri SG, Christodoulou E, Walker PA, Liu J, Skehel JJ, Gamblin SJ, Hay AJ, Daniels RS, McCauley JW, Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21474-9. doi:, 10.1073/pnas.1218841110. Epub 2012 Dec 10. PMID:23236176

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk] Biological Unit Coordinates (2yp5.pdb1.gz) 509 Kb LPC: Ligand-Protein Contacts for 2YP5 CSU: Contacts of Structural Units for 2YP5 Structure Factors (2853 Kb) Retrieve 2YP5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YP5 from S2C, [Save to disk] Re-refined 2yp5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YP5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YP5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YP5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yp5_A] [2yp5] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 2YP5

Community annotation for 2YP5 at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---