2YZ3 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand M5P, SO4, ZN enzyme
Primary referenceCrystallographic investigation of the inhibition mode of a VIM-2 metallo-beta-lactamase from Pseudomonas aeruginosa by a mercaptocarboxylate inhibitor., Yamaguchi Y, Jin W, Matsunaga K, Ikemizu S, Yamagata Y, Wachino J, Shibata N, Arakawa Y, Kurosaki H, J Med Chem. 2007 Dec 27;50(26):6647-53. Epub 2007 Dec 6. PMID:18052313
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (2yz3.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (2yz3.pdb2.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 2YZ3
  • CSU: Contacts of Structural Units for 2YZ3
  • Likely Quarternary Molecular Structure file(s) for 2YZ3
  • Retrieve 2YZ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YZ3 from S2C, [Save to disk]
    • View 2YZ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yz3] [2yz3_A] [2yz3_B]
  • SWISS-PROT database: [Q7BJM5]
  • Domain found in 2YZ3: [Lactamase_B ] by SMART

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