2Z6P	Ligase	date	Aug 06, 2007
title	Crystal Structure Of The Ufc1, Ufm1 Conjugating Enzyme 1
authors	T.Mizushima, K.Tatsumi, Y.Ozaki, T.Kawakami, A.Suzuki, K.Ogasahara, M.Komatsu, E.Kominami, K.Tanaka, T.Yamane
compound		source
Molecule: Ufm1-Conjugating Enzyme 1 Chain: A Synonym: Ubiquitin-Fold Modifier-Conjugating Enzyme 1 Ec: 6.3.2.19 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ufc1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(Ril) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p
symmetry	Space Group: P 41 21 2	R_factor 0.198 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.829 46.829 143.338 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	MSE	enzyme	Ligase E.C.6.3.2.19 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of Ufc1, the Ufm1-conjugating enzyme., Mizushima T, Tatsumi K, Ozaki Y, Kawakami T, Suzuki A, Ogasahara K, Komatsu M, Kominami E, Tanaka K, Yamane T, Biochem Biophys Res Commun. 2007 Nov 3;362(4):1079-84. Epub 2007 Aug 30. PMID:17825256

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk] Biological Unit Coordinates (2z6p.pdb1.gz) 29 Kb LPC: Ligand-Protein Contacts for 2Z6P CSU: Contacts of Structural Units for 2Z6P Likely Quarternary Molecular Structure file(s) for 2Z6P Structure Factors (108 Kb) Retrieve 2Z6P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Z6P from S2C, [Save to disk] Re-refined 2z6p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Z6P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2Z6P

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Z6P, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2z6p_A] [2z6p] SWISS-PROT database: [Q9Y3C8] Domain organization of [UFC1_HUMAN] by SWISSPFAM

Other resources with information on 2Z6P

Community annotation for 2Z6P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---