2ZJB Recombination date Mar 02, 2008
title Crystal Structure Of The Human Dmc1-M200v Polymorphic Variant
authors J.Hikiba, K.Hirota, W.Kagawa, S.Ikawa, T.Kinebuchi, I.Sakane, Y.Takizawa, S.Yokoyama, B.Mandon-Pepin, A.Nicolas, T.Shibata, K.Ohta, H.Kurumizaka
compound source
Molecule: Meiotic Recombination Protein Dmc1lim15 Homolog
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dmc1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b
symmetry Space Group: I 4 2 2
R_factor 0.294 R_Free 0.351
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.089 124.089 217.870 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and functional analyses of the DMC1-M200V polymorphism found in the human population., Hikiba J, Hirota K, Kagawa W, Ikawa S, Kinebuchi T, Sakane I, Takizawa Y, Yokoyama S, Mandon-Pepin B, Nicolas A, Shibata T, Ohta K, Kurumizaka H, Nucleic Acids Res. 2008 Jul;36(12):4181-90. Epub 2008 Jun 19. PMID:18566005
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (2zjb.pdb1.gz) 303 Kb
  • CSU: Contacts of Structural Units for 2ZJB
  • Likely Quarternary Molecular Structure file(s) for 2ZJB
  • Structure Factors (102 Kb)
  • Retrieve 2ZJB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZJB from S2C, [Save to disk]
  • Re-refined 2zjb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZJB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZJB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ZJB, from MSDmotif at EBI
  • Fold representative 2zjb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zjb_A] [2zjb] [2zjb_B]
  • SWISS-PROT database: [Q14565]
  • Domain organization of [DMC1_HUMAN] by SWISSPFAM
  • Domain found in 2ZJB: [AAA ] by SMART
  • Other resources with information on 2ZJB
  • Community annotation for 2ZJB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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