2GM4 An activated, tetrameric gamma-delta resolvase: Hin chimaera bound to cleaved DNA date
authors Kamtekar, S., Ho, R.S., Li, W., Steitz, T.A.
compound source
symmetry
R_factor
R_Free 0.32265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.50
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceImplications of structures of synaptic tetramers of gamma delta resolvase for the mechanism of recombination., Kamtekar S, Ho RS, Cocco MJ, Li W, Wenwieser SV, Boocock MR, Grindley ND, Steitz TA, Proc Natl Acad Sci U S A. 2006 Jul 11;103(28):10642-7. Epub 2006 Jun 28. PMID:16807292
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (2gm4.pdb1.gz) 163 Kb
  • CSU: Contacts of Structural Units for 2GM4
  • Likely Quarternary Molecular Structure file(s) for 2GM4
  • Structure Factors (140 Kb)
  • Retrieve 2GM4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GM4 from S2C, [Save to disk]
  • Re-refined 2gm4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GM4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GM4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GM4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gm4_X] [2gm4_Y] [2gm4_B] [2gm4_J] [2gm4_A] [2gm4_Z] [2gm4] [2gm4_K] [2gm4_I]
  • SWISS-PROT database: [P03012]
  • Domain organization of [TNR1_ECOLI] by SWISSPFAM
  • Domain found in 2GM4: [Resolvase ] by SMART
  • Other resources with information on 2GM4
  • Community annotation for 2GM4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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