2HO7 Rna date Jul 13, 2006
title Pre-Cleavage State Of The Thermoanaerobacter Tengcongensis G Ribozyme Bound To Glucose-6-Phosphate
authors D.J.Klein, A.R.Ferre-D'Amare
compound source
Molecule: Glms Ribozyme Substrate Rna
Chain: A
Engineered: Yes
 Synthetic: Yes

Molecule: Glms Ribozyme Rna
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: This Sequence Occurs Naturally In The Thermoanaerobacter Tengcongensis Ans Was Synthesized By In Transcription
symmetry Space Group: P 21 21 2
R_factor 0.208 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
181.443 40.840 72.097 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand A23, G6P, MG enzyme
Primary referenceStructural basis of glmS ribozyme activation by glucosamine-6-phosphate., Klein DJ, Ferre-D'Amare AR, Science. 2006 Sep 22;313(5794):1752-6. PMID:16990543
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2ho7.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 2HO7
  • CSU: Contacts of Structural Units for 2HO7
  • Likely Quarternary Molecular Structure file(s) for 2HO7
  • Structure Factors (88 Kb)
  • Retrieve 2HO7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HO7 from S2C, [Save to disk]
  • Re-refined 2ho7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2HO7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HO7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HO7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ho7_B] [2ho7] [2ho7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2HO7
  • Community annotation for 2HO7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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