2J3W The crystal structure of the bet3-trs31-sedlin complex. date
authors Kim, Y.G., Oh, B.H.
compound source
symmetry
R_factor
R_Free 0.2765
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand PLM enzyme
note 2J3W is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, E


F, B


Primary referenceThe architecture of the multisubunit TRAPP I complex suggests a model for vesicle tethering., Kim YG, Raunser S, Munger C, Wagner J, Song YL, Cygler M, Walz T, Oh BH, Sacher M, Cell. 2006 Nov 17;127(4):817-30. PMID:17110339
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (2j3w.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (2j3w.pdb2.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 2J3W
  • CSU: Contacts of Structural Units for 2J3W
  • Likely Quarternary Molecular Structure file(s) for 2J3W
  • Structure Factors (665 Kb)
  • Retrieve 2J3W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J3W from S2C, [Save to disk]
  • Re-refined 2j3w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J3W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J3W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2J3W, from MSDmotif at EBI
  • Fold representative 2j3w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j3w_C] [2j3w_B] [2j3w] [2j3w_F] [2j3w_E] [2j3w_A] [2j3w_D]
  • SWISS-PROT database: [Q6DGL5] [Q9CQP2] [O55013]
  • Domain organization of [Q6DGL5_DANRE] [TPPC2_MOUSE] [TPPC3_MOUSE] by SWISSPFAM
  • Other resources with information on 2J3W
  • Community annotation for 2J3W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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