3ANZ Toxin date Sep 16, 2010
title Crystal Structure Of Alpha-Hemolysin
authors K.Yamashita, H.Kawauchi, Y.Tanaka, M.Yao, I.Tanaka
compound source
Molecule: Alpha-Hemolysin
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X, Y, Z, A, B;
Synonym: Alpha-Hl, Alpha-Toxin
Engineered: Yes
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 158878
Strain: Mu50
Gene: Hla, Hly, Sav1163
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 1 21 1
R_factor 0.193 R_Free 0.226
length a length b length c angle alpha angle beta angle gamma
102.821 293.877 170.545 90.00 92.42 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ACY, MPD enzyme
S, F, T, N, K, Y, E, V, Z, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U

Primary reference2-Methyl-2,4-pentanediol induces spontaneous assembly of staphylococcal alpha-hemolysin into heptameric pore structure., Tanaka Y, Hirano N, Kaneko J, Kamio Y, Yao M, Tanaka I, Protein Sci. 2011 Feb;20(2):448-56. doi: 10.1002/pro.579. PMID:21280135
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2816 Kb) [Save to disk]
  • Biological Unit Coordinates (3anz.pdb1.gz) 712 Kb
  • Biological Unit Coordinates (3anz.pdb2.gz) 711 Kb
  • Biological Unit Coordinates (3anz.pdb3.gz) 708 Kb
  • Biological Unit Coordinates (3anz.pdb4.gz) 714 Kb
  • LPC: Ligand-Protein Contacts for 3ANZ
  • CSU: Contacts of Structural Units for 3ANZ
  • Structure Factors (3464 Kb)
  • Retrieve 3ANZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ANZ from S2C, [Save to disk]
  • Re-refined 3anz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ANZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ANZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ANZ, from MSDmotif at EBI
  • Fold representative 3anz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3anz_U] [3anz_P] [3anz_b] [3anz_J] [3anz_K] [3anz_B] [3anz_Y] [3anz_M] [3anz_a] [3anz_A] [3anz_Q] [3anz_F] [3anz_E] [3anz_Z] [3anz_O] [3anz] [3anz_S] [3anz_G] [3anz_C] [3anz_L] [3anz_R] [3anz_X] [3anz_N] [3anz_V] [3anz_D] [3anz_W] [3anz_I] [3anz_T] [3anz_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ANZ
  • Community annotation for 3ANZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science