3AXM	Lyase	date	Apr 11, 2011
title	Structure Of Rice Rubisco In Complex With 6pg
authors	H.Matsumura, E.Mizohata, H.Ishida, A.Kogami, T.Ueno, A.Makino, T.I A.Yokota, T.Mae, Y.Kai
compound		source
Molecule: Ribulose Bisphosphate Carboxylase Large Chain Chain: A, B, C, D, E, F, G, H Synonym: Rubisco Large Subunit, D-Ribulose 1,5-Bisphosphate Carboxylaseoxygenase Large Subunit; Ec: 4.1.1.39		Organism_scientific: Oryza Sativa Japonica Group Organism_common: Japanese Rice Organism_taxid: 39947 Tissue: Leaves
Molecule: Ribulose Bisphosphate Carboxylase Small Chain, Chloroplastic; Chain: S, T, U, V, W, X, Y, Z Synonym: Rubisco Small Subunit, D-Ribulose 1,5-Bisphosphate Carboxylaseoxygenase Small Subunit; Ec: 4.1.1.39		Organism_scientific: Oryza Sativa Japonica Group Organism_common: Japanese Rice Organism_taxid: 39947 Tissue: Leaves
symmetry	Space Group: P 1 21 1	R_factor 0.171 R_Free 0.190
crystal cell	length a length b length c angle alpha angle beta angle gamma 110.408 199.624 111.169 90.00 91.45 90.00
method	X-Ray Diffraction	resolution	1.65 Å
ligand	6PG, KCX, MG, NME	enzyme	Lyase E.C.4.1.1.39 BRENDA
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	Crystal Structure of Rice Rubisco and Implications for Activation Induced by Positive Effectors NADPH and 6-Phosphogluconate., Matsumura H, Mizohata E, Ishida H, Kogami A, Ueno T, Makino A, Inoue T, Yokota A, Mae T, Kai Y, J Mol Biol. 2012 May 17. PMID:22609438

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (797 Kb) [Save to disk] Biological Unit Coordinates (3axm.pdb1.gz) 786 Kb LPC: Ligand-Protein Contacts for 3AXM CSU: Contacts of Structural Units for 3AXM Structure Factors (8419 Kb) Retrieve 3AXM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3AXM from S2C, [Save to disk] Re-refined 3axm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3AXM

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3AXM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3axm_X] [3axm_E] [3axm_W] [3axm_A] [3axm_B] [3axm_U] [3axm_H] [3axm_Y] [3axm_D] [3axm_Z] [3axm] [3axm_G] [3axm_V] [3axm_S] [3axm_T] [3axm_F] [3axm_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3AXM: [RuBisCO_small ] by SMART

Other resources with information on 3AXM

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